03.
Converting data to open format
Proteowizard
MSConvert MALDI
MSConvert LCMS
MSConvert DIMS
02.
Data acquisition
08.
Data archiving and reporting
Sharing metabolomics data
MetaboLights
Citing the tools
Reporting your workflow
04.
Data pre-processing
Aims of Pre-processing
Processing MALDI data
Processing LCMS
Processing DIMS
05.
Extracting and formatting peak table and metadata
What's a peak table?
Metadata
Peak table MassUp
Peak Table LCMS
01.
Metabolite Extraction
06.
Multivariate analysis
Multivariate analysis
Metaboanalyst
R for Multivariate analysis
00.
Overview of workflow
What is it?
Stages of the workflow
Assumptions
Experimental Structure
Workflow diagram
07.
Putative metabolite ID
What are my metabolites?
MSI identification guidelines
METLIN
KEGG
Other databases
More
GitHub repo
Snippets
Credits
CC-BY Licence
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Untargeted Metabolomics Workflow
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Extracting and formatting peak table and metadata
> Peak Table LCMS
Extracting a peak table with data downloaded from XCMS Online
LCMS
Peak Table LCMS
Extracting a peak table with data downloaded from XCMS Online